JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT1_chr9_76454182_76512416	0/0	t0007	4282	12	10	2	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0008	4280	10	9	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0009	4282	7	6	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0010	4280	6	0	0	6	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0011	4279	4	4	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0012	4283	3	3	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0013	4284	3	0	3	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0014	4282	3	3	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0015	4279	3	0	0	3	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0016	4282	3	0	3	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0017	4279	3	2	0	0	1	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0018	4282	3	3	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0019	4280	2	0	0	2	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0020	4279	2	0	0	2	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0021	4282	2	2	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0022	4282	2	2	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0023	4280	2	2	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0024	4280	2	2	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0025	4283	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0026	4280	1	0	0	0	0	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0027	4283	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0028	4280	1	0	0	0	0	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0029	4283	1	0	0	0	0	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0030	4280	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0031	4280	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0032	4280	1	0	0	0	0	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0033	4258	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0034	4280	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0035	4283	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0036	4283	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0037	4283	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0038	4284	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0039	4280	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0040	4279	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0041	4282	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0042	4282	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0043	4282	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0044	4282	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0045	4282	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0046	4279	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0047	4280	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0048	4280	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT2_chr6_10516351_10634368	1/1	t0001	3297	233	55	40	105	7	24	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0002	3297	39	1	6	25	1	6	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0003	3297	11	6	4	0	0	1	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0004	3301	7	6	0	0	0	1	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0005	3301	3	1	2	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0006	3297	3	0	3	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0007	3297	3	0	1	0	0	2	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0008	3301	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368