JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT2_chr6_10516351_10634368	0/0	t0009	3297	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0010	3301	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0011	3230	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0012	3297	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0013	3297	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0014	3301	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0015	3297	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0016	3297	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0017	3297	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0018	3297	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0019	3297	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0020	3297	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0021	3301	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0022	3297	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0023	3301	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0024	3297	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0025	3297	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0026	3297	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0027	3234	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	t0028	2762	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10550809_10634368	1/1	t0001	3377	266	57	52	116	11	28	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0002	3377	44	1	7	27	1	8	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0003	3381	7	5	1	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0004	3377	5	5	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0005	3381	3	1	2	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0006	3381	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0007	3381	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0008	3377	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0009	3377	2	0	2	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0010	3381	2	2	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0011	3381	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0012	3377	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0013	3381	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0014	3377	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0015	3377	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0016	3377	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0017	3377	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0018	3377	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	t0019	3377	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT3_chr15_59606783_59627723	0/0	t0001	3623	69	16	19	23	3	8	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/1	t0002	3624	55	10	18	16	3	7	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0003	3622	43	2	4	30	6	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0004	3625	20	3	8	5	2	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0005	3631	17	0	0	14	0	3	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0006	3624	16	7	4	3	0	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0007	3625	16	2	7	4	0	3	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0008	3630	11	0	0	9	1	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0009	3629	9	0	0	7	0	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0010	3623	8	2	1	3	0	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0011	3630	8	0	0	7	0	1	copy fasta	GCNT3	chr15	59606783	59627723