JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT3_chr15_59606783_59627723	0/0	t0012	3631	7	0	0	5	0	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0013	3624	7	0	3	4	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0014	3623	6	0	0	5	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0015	3623	5	5	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0016	3621	5	0	1	3	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0017	3621	4	0	2	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0018	3626	4	0	2	1	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0019	3631	4	0	0	3	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0020	3632	4	0	0	4	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0021	3623	3	3	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0022	3626	3	0	1	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0023	3624	3	3	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0024	3626	3	0	0	3	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0025	3624	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0026	3622	2	0	0	0	1	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0027	3617	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0028	3626	2	0	0	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0029	3628	2	0	0	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0030	3624	2	0	1	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0031	3622	2	0	0	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0032	3622	2	0	0	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0033	3632	2	0	0	0	0	2	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0034	3625	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0035	3624	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0036	3625	2	1	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0037	3625	2	0	0	2	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0038	3624	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0039	3625	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	1/0	t0040	3618	1	0	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0041	3623	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0042	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0043	3611	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0044	3613	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0045	3613	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0046	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0047	3612	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0048	3622	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0049	3623	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0050	3632	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0051	3623	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0052	3631	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0053	3632	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0054	3617	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0055	3623	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0056	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0057	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0058	3621	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0059	3621	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0060	3623	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0061	3623	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723