JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT3_chr15_59606783_59627723	0/0	t0062	3622	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0063	3623	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0064	3624	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0065	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0066	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0067	3627	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0068	3627	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0069	3622	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0070	3623	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0071	3625	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0072	3618	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0073	3624	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0074	3625	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0075	3626	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0076	3627	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0077	3627	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0078	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0079	3626	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0080	3627	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0081	3623	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0082	3622	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0083	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0084	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0085	3626	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0086	3612	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0087	3624	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0088	3625	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0089	3624	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0090	3630	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0091	3624	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0092	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0093	3629	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0094	3625	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0095	3627	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0096	3628	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0097	3630	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0098	3628	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0099	3630	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0100	3630	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0101	3632	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0102	3634	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0103	3634	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0104	3624	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0105	3624	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0106	3627	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0107	3622	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0108	3626	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	t0109	3625	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT4_chr5_75020346_75057558	0/0	t0001	3663	49	4	10	17	6	12	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0002	3628	41	2	6	30	0	3	copy fasta	GCNT4	chr5	75020346	75057558