JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT4_chr5_75020346_75057558	0/0	t0003	3664	35	5	0	20	1	9	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0004	3664	31	3	5	20	1	2	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0005	3661	22	0	5	14	2	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0006	3665	14	0	0	13	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0007	3662	10	7	2	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0008	3629	10	0	2	7	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0009	3663	9	3	1	4	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0010	3665	9	2	1	3	0	3	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/1	t0011	3663	8	0	6	0	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0012	4005	8	8	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0013	3628	8	2	2	0	1	3	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0014	3627	8	2	1	5	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0015	4006	7	7	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0016	3662	7	0	2	5	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0017	3662	6	0	1	4	1	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0018	3631	6	3	2	0	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0019	3628	5	0	5	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0020	3998	5	5	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0021	3635	5	1	0	4	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0022	3633	5	2	3	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0023	3632	3	0	0	0	1	2	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0024	3628	3	3	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0025	3632	3	3	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0026	3631	3	3	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0027	3632	3	3	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0028	3661	2	0	1	0	1	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0029	3665	2	0	0	2	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0030	3666	2	0	0	2	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0031	4002	2	1	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0032	4000	2	1	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0033	3633	2	2	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0034	3629	2	0	0	0	0	2	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0035	3637	2	2	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0036	3638	2	0	2	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0037	3633	2	1	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0038	3634	2	0	0	2	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0039	3630	2	0	0	2	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0040	3626	2	0	2	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0041	3630	2	2	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0042	3664	1	0	0	0	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0043	3630	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0044	3661	1	0	0	0	1	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0045	3663	1	0	0	0	1	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0046	3661	1	0	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0047	3663	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0048	3666	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	1/0	t0049	3661	1	0	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0050	3665	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0051	3663	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0052	3627	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558