JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCNT4_chr5_75020346_75057558	0/0	t0053	3629	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0054	3664	1	0	0	0	0	1	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0055	3664	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0056	3999	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0057	4003	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0058	4027	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0059	3998	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0060	4005	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0061	3637	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0062	3624	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0063	3628	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0064	3627	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0065	3631	1	0	0	1	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0066	3629	1	0	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0067	3630	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0068	3633	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0069	3660	1	0	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0070	3632	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0071	3627	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	t0072	3662	1	0	1	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCSAML_chr1_247544134_247582690	1/1	t0001	3367	235	70	43	76	10	34	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0002	3367	76	1	10	55	2	8	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0003	3367	35	1	10	19	1	4	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0004	3367	12	10	2	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0005	3366	6	0	0	6	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0006	3367	5	0	0	5	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0007	3371	5	0	5	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0008	3367	4	0	2	0	2	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0009	3367	3	3	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0010	3367	3	3	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0011	3367	3	0	0	3	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0012	3367	3	3	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0013	3367	2	2	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0014	3367	2	0	0	2	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0015	3367	2	0	0	2	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0016	3367	2	0	1	0	1	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0017	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0018	3367	1	1	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0019	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0020	3367	1	0	1	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0021	3367	1	0	0	0	0	1	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0022	3367	1	0	0	0	1	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0023	3367	1	1	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0024	3367	1	1	0	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0025	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0026	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0027	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0028	3367	1	0	0	0	0	1	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0029	3367	1	0	0	0	1	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	t0030	3367	1	0	0	1	0	0	copy fasta	GCSAML	chr1	247544134	247582690