JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCSAM_chr3_112115839_112138248	1/0	t0001	2745	308	68	49	143	12	35	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0002	2745	35	0	8	23	0	4	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/1	t0003	2745	25	6	11	1	5	1	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0004	2745	12	0	0	10	0	2	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0005	2745	10	9	1	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0006	2745	5	0	2	0	0	3	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0007	2745	4	3	1	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0008	2745	3	3	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0009	2745	2	2	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0010	2745	2	0	0	2	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0011	2745	2	2	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0012	2745	2	2	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0013	2745	2	0	1	0	1	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0014	2745	1	0	0	0	0	1	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0015	2745	1	1	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0016	2745	1	0	0	0	0	1	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0017	2745	1	0	0	0	0	1	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0018	2745	1	0	1	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0019	2745	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0020	2745	1	1	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0021	2745	1	1	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0022	2745	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	t0023	2745	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSH_chr16_81076945_81101395	1/1	t0001	1039	237	59	47	93	11	25	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0002	1036	59	7	7	37	1	7	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0003	1039	21	4	3	10	2	2	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0004	1036	12	6	0	6	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0005	1040	6	3	2	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0006	1036	6	6	0	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0007	1039	3	0	0	3	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0008	1036	2	1	1	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0009	1039	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0010	1036	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0011	1039	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0012	1047	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0013	1036	1	1	0	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0014	1036	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0015	1039	1	0	0	1	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	t0016	1039	1	1	0	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GC_chr4_71736697_71789079	1/1	t0001	261	277	72	41	129	8	25	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	t0002	261	106	21	11	67	0	7	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	t0003	261	5	5	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GDAP1L1_chr20_44242308_44285947	1/1	t0001	1675	280	56	41	139	9	33	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0002	1675	52	11	1	36	0	4	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0003	1675	28	8	11	0	4	5	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0004	1675	7	0	0	7	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0005	1675	5	5	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0006	1674	4	1	3	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0007	1675	3	3	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0008	1675	2	0	0	0	2	0	copy fasta	GDAP1L1	chr20	44242308	44285947