Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH9A1_chr1_165657216_165703562	0/0	t0005	839	2	2	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0006	839	1	0	1	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0007	839	1	0	0	0	0	1	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0008	839	1	0	1	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0009	839	1	1	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0010	839	1	0	1	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDOA_chr16_30060760_30075414	1/1	t0001	384	367	84	61	164	14	42	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	t0002	384	1	1	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	t0003	384	1	1	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	t0004	384	1	0	1	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOB_chr9_101415560_101440774	0/0	t0001	1326	188	29	36	89	6	28	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	1/1	t0002	1326	168	38	32	77	9	10	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0003	1326	22	20	1	0	0	1	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0004	1326	17	0	1	16	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0005	1326	7	0	2	0	1	4	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0006	1326	4	0	2	0	0	2	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0007	1326	4	3	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0008	1326	1	1	0	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0009	1326	1	1	0	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0010	1326	1	1	0	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0011	1326	1	0	0	1	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0012	1326	1	1	0	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0013	1326	1	0	0	0	0	1	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0014	1326	1	0	0	1	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	t0015	1326	1	0	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOC_chr17_28568120_28581895	1/1	t0001	514	351	84	64	155	8	38	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	t0002	514	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALG10B_chr12_38311774_38334721	0/0	t0001	8583	60	1	16	35	1	7	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0002	8583	53	0	1	47	1	4	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0003	8635	49	5	19	17	2	6	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/1	t0004	8584	35	4	15	0	5	10	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0005	8585	30	6	9	12	0	3	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0006	8580	16	15	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0007	8583	16	0	0	16	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0008	8584	16	0	0	16	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	1/0	t0009	8629	14	12	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0010	8583	14	0	0	14	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0011	8583	13	0	0	13	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0012	8577	9	8	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0013	8584	7	4	3	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0014	8578	6	6	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0015	8631	4	4	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0016	8583	4	0	0	3	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0017	8579	4	0	0	4	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0018	8584	4	0	0	4	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0019	8583	4	0	0	0	0	4	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0020	8584	4	4	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0021	8635	3	0	0	0	3	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0022	8635	3	0	1	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0023	8584	3	0	0	3	0	0	copy fasta	ALG10B	chr12	38311774	38334721