JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDAP1L1_chr20_44242308_44285947	0/0	t0009	1675	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0010	1675	1	0	0	0	0	1	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0011	1675	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0012	1675	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0013	1675	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0014	1675	1	0	0	0	1	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0015	1675	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0016	1675	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0017	1675	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0018	1675	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	t0019	1675	1	0	0	0	0	1	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1_chr8_74345403_74371876	0/0	t0001	2569	173	27	30	94	6	16	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/1	t0002	2569	91	17	16	45	1	11	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0003	2569	82	10	10	50	6	6	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0004	2569	13	0	8	5	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0005	2568	12	10	2	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0006	2569	11	11	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0007	2566	6	0	6	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0008	2569	6	0	0	6	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0009	2569	5	3	2	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0010	2569	5	0	4	0	0	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0011	2569	3	3	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0012	2569	3	0	1	0	1	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0013	2569	3	3	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	1/0	t0014	2569	2	0	0	0	0	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0015	2569	2	2	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0016	2569	2	0	0	2	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0017	2569	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0018	2569	1	0	0	1	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0019	2569	1	0	0	1	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0020	2569	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0021	2569	1	0	0	1	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0022	2569	1	0	0	1	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0023	2569	1	0	0	0	0	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0024	2569	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0025	2569	1	0	1	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0026	2569	1	0	0	0	0	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	t0027	2569	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP2_chr1_117858485_117934621	1/0	t0001	7326	83	9	21	39	4	9	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0002	7319	62	10	2	45	0	5	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0003	7324	39	10	12	8	3	6	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0004	7325	38	2	5	27	2	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0005	7326	22	12	2	5	1	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0006	7327	11	3	2	5	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0007	7326	10	0	0	10	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0008	7326	6	0	2	2	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0009	7325	5	0	0	3	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0010	7326	5	0	1	3	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0011	7325	5	5	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0012	7326	4	4	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621