JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDAP2_chr1_117858485_117934621	0/0	t0013	7325	4	0	2	0	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0014	7326	4	1	1	0	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0015	7326	4	0	0	4	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/1	t0016	7324	4	1	2	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0017	7322	4	4	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0018	7316	3	3	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0019	7326	3	0	0	3	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0020	7325	2	0	0	0	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0021	7326	2	2	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0022	7327	2	1	0	0	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0023	7324	2	0	0	0	0	2	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0024	7327	2	2	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0025	7326	2	0	0	1	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0026	7322	2	2	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0027	7322	2	2	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0028	7326	1	0	0	0	1	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0029	7326	1	0	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0030	7340	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0031	7319	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0032	7323	1	0	0	0	1	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0033	7324	1	0	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0034	7324	1	0	0	0	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0035	7324	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0036	7325	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0037	7326	1	0	0	0	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0038	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0039	7326	1	0	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0040	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0041	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0042	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0043	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0044	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0045	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0046	7327	1	0	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0047	7327	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0048	7317	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0049	7326	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0050	7327	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0051	7324	1	0	0	0	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0052	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0053	7325	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0054	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0055	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0056	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0057	7327	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0058	7326	1	1	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	t0059	7326	1	0	0	0	0	1	copy fasta	GDAP2	chr1	117858485	117934621
GDA_chr9_72144440_72257224	0/1	t0001	4002	100	20	25	43	2	9	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	1/0	t0002	4003	66	19	6	29	3	8	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0003	4003	56	12	14	23	2	5	copy fasta	GDA	chr9	72144440	72257224