JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDA_chr9_72144440_72257224	0/0	t0004	4003	17	2	2	5	2	6	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0005	4002	17	0	3	14	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0006	4003	8	1	6	0	1	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0007	4003	5	5	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0008	3999	4	4	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0009	4003	3	3	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0010	4003	3	2	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0011	4002	3	3	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0012	4003	2	0	0	2	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0013	4003	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0014	4003	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0015	4003	2	0	2	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0016	4003	2	1	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0017	4002	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0018	4002	2	0	0	2	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0019	4002	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0020	4003	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0021	4003	1	1	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0022	4003	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0023	4003	1	0	0	0	0	1	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0024	4003	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0025	4003	1	1	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0026	4003	1	0	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0027	4003	1	0	0	0	0	1	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0028	4003	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0029	4002	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0030	4002	1	0	0	0	1	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0031	4002	1	0	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0032	4002	1	0	0	0	1	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	t0033	4002	1	0	0	1	0	0	copy fasta	GDA	chr9	72144440	72257224
GDE1_chr16_19496693_19527098	0/1	t0001	1907	130	19	28	59	4	19	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0002	1907	71	3	11	54	1	2	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	1/0	t0003	1912	62	8	12	36	1	4	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0004	1906	25	9	5	8	1	2	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0005	1906	22	11	3	7	1	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0006	1907	16	0	3	5	0	8	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0007	1908	10	8	0	1	0	1	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0008	1908	8	3	0	4	0	1	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0009	1905	8	6	2	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0010	1905	6	6	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0011	1908	6	6	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0012	1901	5	4	1	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0013	1913	5	0	0	3	0	2	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0014	1907	3	3	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0015	1912	2	0	0	2	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0016	1912	2	2	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0017	1912	2	0	0	0	0	2	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0018	1907	2	2	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0019	1907	1	0	1	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0020	1907	1	0	1	0	0	0	copy fasta	GDE1	chr16	19496693	19527098