JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDE1_chr16_19496693_19527098	0/0	t0021	1907	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0022	1907	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0023	1912	1	0	1	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0024	1907	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0025	1906	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0026	1912	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0027	1912	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0028	1907	1	0	0	1	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0029	1905	1	1	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0030	1907	1	1	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	t0031	1913	1	0	0	0	0	1	copy fasta	GDE1	chr16	19496693	19527098
GDF10_chr10_47295197_47318577	1/0	t0001	1241	120	39	16	47	5	12	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/1	t0002	1241	92	4	27	43	4	13	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0003	1241	68	6	10	43	1	8	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0004	1241	48	17	7	21	0	3	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0005	1241	22	6	7	9	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0006	1241	15	8	3	1	1	2	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0007	1241	14	1	0	13	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0008	1241	11	11	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0009	1241	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0010	1241	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0011	1241	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0012	1241	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0013	1241	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0014	1241	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0015	1241	1	0	0	0	1	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	t0016	1241	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF11_chr12_55738122_55762264	0/0	t0001	7583	128	5	27	83	3	10	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0002	7584	30	9	2	16	0	3	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/1	t0003	7585	27	3	0	21	0	2	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0004	7583	22	3	3	13	1	2	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0005	7582	19	17	2	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0006	7583	13	9	0	1	0	3	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0007	7583	10	0	0	10	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0008	7584	8	4	0	3	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0009	7583	7	1	5	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0010	7583	6	6	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0011	7583	6	0	0	6	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0012	7585	6	0	0	0	2	4	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0013	7584	5	4	0	0	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0014	7583	5	0	3	0	0	2	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0015	7584	4	0	2	0	1	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0016	7581	3	3	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0017	7584	3	3	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0018	7585	3	3	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0019	7584	3	0	0	3	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0020	7586	3	0	0	0	0	3	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0021	7583	2	0	0	2	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0022	7582	2	2	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0023	7584	2	0	2	0	0	0	copy fasta	GDF11	chr12	55738122	55762264