JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF11_chr12_55738122_55762264	0/0	t0024	7582	2	0	1	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0025	7583	2	2	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0026	7583	2	2	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0027	7582	2	2	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0028	7583	1	0	0	0	1	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0029	7586	1	0	0	0	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0030	7581	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0031	7583	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0032	7583	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0033	7584	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0034	7581	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0035	7585	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0036	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0037	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0038	7585	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0039	7582	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0040	7585	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0041	7585	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0042	7585	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0043	7584	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0044	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0045	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0046	7582	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0047	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0048	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	1/0	t0049	7578	1	0	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0050	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0051	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0052	7584	1	0	0	0	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0053	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0054	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0055	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0056	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0057	7586	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0058	7585	1	0	0	0	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0059	7584	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0060	7584	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0061	7584	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0062	7584	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0063	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0064	7584	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0065	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0066	7583	1	0	0	1	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0067	7583	1	0	0	0	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	t0068	7583	1	0	1	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF15_chr19_18381158_18394176	0/0	t0001	274	247	61	43	110	9	24	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	1/0	t0002	274	79	10	12	39	5	12	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/1	t0003	274	48	25	13	0	2	7	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	t0004	274	36	1	2	31	0	2	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	t0005	274	11	0	2	6	2	1	copy fasta	GDF15	chr19	18381158	18394176