JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF15_chr19_18381158_18394176	0/0	t0006	274	2	0	2	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	t0007	274	1	1	0	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF1_chr19_18863545_18901158	0/0	t0001	1461	151	20	18	90	3	20	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/1	t0002	1461	131	26	28	53	9	14	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0003	1461	89	47	12	19	1	10	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0004	1461	2	0	2	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0005	1461	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	1/0	t0006	1461	1	0	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0007	1461	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0008	1461	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0009	1461	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0010	1461	1	0	0	0	1	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	t0011	1461	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF2_chr10_47317454_47332588	0/0	t0001	2020	122	20	32	49	8	13	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0002	2020	99	1	16	72	1	9	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/1	t0003	2020	36	20	5	3	1	6	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0004	2020	34	1	7	12	6	8	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0005	2020	28	1	2	19	0	6	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	1/0	t0006	2020	23	8	3	8	0	3	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0007	2020	20	17	3	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0008	2020	9	0	0	9	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0009	2020	8	7	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0010	2020	7	0	0	7	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0011	2020	7	7	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0012	2020	6	4	2	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0013	2020	3	0	0	3	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0014	2020	3	0	0	3	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0015	2020	3	3	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0016	2020	1	0	0	1	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0017	2020	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0018	2020	1	0	0	1	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0019	2020	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0020	2020	1	0	0	1	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0021	2020	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0022	2020	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0023	2020	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0024	2020	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0025	2020	1	0	0	1	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0026	2020	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0027	2020	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0028	2020	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0029	2020	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0030	2020	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	t0031	2020	1	0	0	1	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF3_chr12_7684784_7700775	1/1	t0001	142	467	95	78	226	16	50	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	t0002	142	1	1	0	0	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF5_chr20_35428347_35443228	0/1	t0001	863	140	5	29	81	5	19	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	1/0	t0002	863	121	57	23	16	6	18	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0003	863	50	4	6	30	2	8	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0004	863	19	19	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228