JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF5_chr20_35428347_35443228	0/0	t0005	863	8	1	5	1	1	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0006	863	6	1	0	4	0	1	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0007	863	6	6	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0008	863	5	4	1	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0009	863	2	0	0	2	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0010	863	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0011	863	1	0	0	1	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	t0012	863	1	0	0	1	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF6_chr8_96137333_96165806	0/0	t0001	2349	25	1	5	13	0	6	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0002	2341	23	3	2	13	1	4	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0003	2345	15	5	4	3	1	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0004	2347	15	0	4	9	0	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0005	2351	15	0	2	12	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	1/0	t0006	2345	13	1	3	6	0	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0007	2343	11	2	4	3	1	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0008	2349	11	1	3	5	0	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0009	2343	10	0	0	9	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0010	2353	10	0	2	8	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0011	2357	8	8	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0012	2351	8	1	3	3	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0013	2353	8	1	6	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0014	2343	8	0	0	8	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0015	2347	7	2	0	1	1	3	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0016	2339	6	0	4	0	1	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0017	2357	6	2	1	2	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0018	2345	6	6	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0019	2342	5	5	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0020	2348	5	0	2	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0021	2341	5	1	1	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0022	2355	5	0	1	3	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/1	t0023	2359	5	0	1	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0024	2348	4	3	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0025	2353	4	4	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0026	2357	4	0	1	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0027	2335	4	0	0	4	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0028	2341	4	0	0	4	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0029	2350	3	0	0	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0030	2350	3	1	1	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0031	2352	3	0	0	3	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0032	2345	3	2	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0033	2349	3	1	1	0	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0034	2359	3	1	1	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0035	2361	3	0	3	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0036	2363	3	0	1	1	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0037	2353	3	3	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0038	2359	2	2	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0039	2346	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0040	2346	2	0	0	1	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0041	2346	2	2	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0042	2352	2	1	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806