JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF6_chr8_96137333_96165806	0/0	t0043	2354	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0044	2358	2	1	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0045	2329	2	0	0	0	0	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0046	2335	2	1	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0047	2337	2	0	0	1	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0048	2337	2	0	0	1	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0049	2341	2	0	0	0	0	2	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0050	2345	2	2	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0051	2357	2	1	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0052	2357	2	1	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0053	2361	2	2	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0054	2343	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0055	2345	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0056	2380	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0057	2337	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0058	2339	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0059	2371	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0060	2347	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0061	2353	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0062	2350	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0063	2345	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0064	2349	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0065	2351	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0066	2360	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0067	2342	1	0	0	0	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0068	2342	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0069	2348	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0070	2348	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0071	2350	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0072	2354	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0073	2356	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0074	2356	1	0	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0075	2356	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0076	2358	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0077	2362	1	0	0	0	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0078	2348	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0079	2346	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0080	2353	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0081	2357	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0082	2327	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0083	2333	1	0	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0084	2337	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0085	2339	1	0	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0086	2341	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0087	2345	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0088	2347	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0089	2347	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0090	2351	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0091	2353	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0092	2353	1	0	0	0	1	0	copy fasta	GDF6	chr8	96137333	96165806