JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF6_chr8_96137333_96165806	0/0	t0093	2355	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0094	2355	1	0	0	0	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0095	2359	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0096	2363	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0097	2365	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0098	2365	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0099	2367	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0100	2369	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0101	2361	1	0	1	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0102	2357	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0103	2355	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0104	2355	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0105	2353	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0106	2355	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0107	2345	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0108	2337	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0109	2347	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	t0110	2349	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF7_chr2_20662144_20684243	0/0	t0001	7912	24	0	5	17	0	2	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0002	7912	16	0	1	14	1	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0003	7912	12	0	0	12	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0004	7908	9	0	0	9	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0005	7912	9	0	6	3	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0006	7912	9	1	2	5	1	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0007	7912	9	0	0	7	0	2	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0008	7913	9	4	3	1	1	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0009	7912	8	0	3	0	1	4	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0010	7912	7	0	0	7	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0011	7913	7	7	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0012	7913	6	0	0	6	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0013	7912	5	0	3	0	2	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0014	7908	4	0	0	4	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0015	7913	4	4	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0016	7912	4	0	4	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0017	7912	4	0	0	4	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0018	7908	3	0	0	3	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0019	7909	3	2	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0020	7912	3	1	2	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0021	7912	3	1	1	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0022	7912	3	1	2	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0023	7912	3	1	1	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0024	7913	3	3	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0025	7912	3	0	0	0	0	3	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0026	7913	3	3	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0027	7913	3	0	0	3	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0028	7914	3	3	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0029	7912	3	0	0	3	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0030	7909	2	0	1	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0031	7909	2	0	1	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0032	7908	2	0	0	2	0	0	copy fasta	GDF7	chr2	20662144	20684243