Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG10B_chr12_38311774_38334721	0/0	t0024	8585	3	3	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0025	8585	3	0	0	3	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0026	8584	3	0	0	3	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0027	8584	3	1	2	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0028	8584	3	0	3	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0029	8580	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0030	8635	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0031	8635	2	0	1	0	1	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0032	8635	2	0	0	1	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0033	8635	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0034	8629	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0035	8635	2	0	0	0	1	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0036	8634	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0037	8583	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0038	8583	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0039	8584	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0040	8584	2	2	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0041	8582	2	1	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0042	8583	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0043	8635	1	0	0	0	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0044	8635	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0045	8635	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0046	8635	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0047	8635	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0048	8636	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0049	8635	1	0	0	0	1	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0050	8640	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0051	8635	1	0	0	0	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0052	8635	1	0	0	0	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0053	8635	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0054	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0055	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0056	8583	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0057	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0058	8580	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0059	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0060	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0061	8584	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0062	8584	1	0	0	0	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0063	8585	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0064	8583	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0065	8582	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0066	8584	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0067	8582	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0068	8585	1	0	0	0	0	1	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0069	8585	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0070	8585	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0071	8585	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0072	8585	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0073	8583	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721