JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF7_chr2_20662144_20684243	0/0	t0233	7914	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0234	7914	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0235	7913	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0236	7912	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0237	7916	1	0	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0238	7916	1	0	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0239	7916	1	0	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0240	7916	1	0	0	0	1	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0241	7914	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0242	7914	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0243	7916	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0244	7915	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0245	7912	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0246	7896	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0247	7896	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0248	7912	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0249	7909	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0250	7912	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0251	7912	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	t0252	7912	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF9_chr5_132856185_132871469	0/0	t0001	2341	134	27	21	67	3	16	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	1/0	t0002	2341	115	0	20	82	3	9	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0003	2341	52	2	7	31	4	8	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/1	t0004	2341	35	1	7	10	5	11	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0005	2341	25	11	12	1	1	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0006	2341	25	5	0	20	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0007	2341	10	9	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0008	2341	7	6	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0009	2341	7	7	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0010	2341	6	6	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0011	2341	6	5	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0012	2341	6	3	3	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0013	2341	5	4	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0014	2341	5	5	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0015	2341	4	0	0	4	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0016	2341	4	0	0	4	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0017	2341	2	2	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0018	2341	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0019	2341	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0020	2330	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0021	2341	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0022	2342	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0023	2341	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0024	2341	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0025	2341	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0026	2341	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0027	2342	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0028	2341	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0029	2341	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0030	2342	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469