JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDF9_chr5_132856185_132871469	0/0	t0031	2341	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0032	2342	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	t0033	2341	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDI1_chrX_154432154_154448467	1/1	t0001	897	265	70	53	104	6	30	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0002	897	4	4	0	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0003	898	2	0	1	0	0	1	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0004	888	1	0	0	0	0	1	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0005	894	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0006	896	1	0	1	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0007	894	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0008	897	1	1	0	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0009	892	1	0	1	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0010	898	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0011	895	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0012	897	1	0	0	0	1	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0013	897	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0014	903	1	1	0	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	t0015	897	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI2_chr10_5760223_5818434	0/1	t0001	961	175	37	15	92	10	20	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0002	961	93	20	28	34	3	8	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0003	961	43	4	3	27	2	7	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0004	961	30	0	12	13	1	4	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	1/0	t0005	960	10	7	2	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0006	962	10	0	0	10	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0007	961	7	0	0	7	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0008	961	7	0	6	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0009	961	6	6	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0010	961	4	0	0	4	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0011	961	2	2	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0012	961	2	0	0	2	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0013	961	2	2	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0014	961	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0015	961	1	0	0	0	0	1	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0016	962	1	0	0	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0017	962	1	0	0	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0018	962	1	0	0	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0019	960	1	0	0	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	t0020	945	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDNF_chr5_37807677_37845041	1/0	t0001	3536	64	5	12	38	1	7	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0002	3534	43	4	6	27	0	6	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/1	t0003	3536	42	3	11	22	3	2	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0004	3536	22	1	1	20	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0005	3534	14	0	10	2	0	2	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0006	3536	14	0	3	5	0	6	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0007	3533	11	0	0	11	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0008	3536	10	5	1	0	3	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0009	3536	10	0	1	9	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0010	3549	8	0	1	6	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0011	3536	7	6	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0012	3539	7	0	0	6	0	1	copy fasta	GDNF	chr5	37807677	37845041