JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDNF_chr5_37807677_37845041	0/0	t0013	3535	7	0	0	5	0	2	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0014	3535	7	0	3	0	3	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0015	3536	6	1	0	4	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0016	3539	6	0	1	5	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0017	3536	6	4	1	0	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0018	3536	6	0	1	5	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0019	3537	5	0	0	5	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0020	3537	5	4	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0021	3537	5	0	3	2	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0022	3559	4	4	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0023	3560	3	2	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0024	3564	3	3	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0025	3533	3	3	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0026	3535	3	0	1	1	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0027	3535	3	0	2	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0028	3534	3	0	0	0	1	2	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0029	3536	3	0	0	3	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0030	3540	3	3	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0031	3556	3	3	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0032	3556	3	3	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0033	3563	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0034	3534	2	0	0	2	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0035	3533	2	0	0	2	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0036	3538	2	1	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0037	3542	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0038	3542	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0039	3538	2	0	0	2	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0040	3536	2	0	2	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0041	3559	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0042	3531	2	1	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0043	3534	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0044	3533	2	0	1	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0045	3535	2	0	0	2	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0046	3537	2	0	0	1	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0047	3550	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0048	3559	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0049	3562	2	1	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0050	3535	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0051	3535	2	2	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0052	3530	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0053	3536	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0054	3536	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0055	3543	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0056	3556	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0057	3564	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0058	3539	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0059	3533	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0060	3534	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0061	3533	1	0	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0062	3533	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041