JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDNF_chr5_37807677_37845041	0/0	t0063	3536	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0064	3537	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0065	3537	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0066	3536	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0067	3535	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0068	3537	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0069	3536	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0070	3536	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0071	3536	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0072	3540	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0073	3546	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0074	3542	1	0	0	0	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0075	3542	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0076	3550	1	0	0	0	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0077	3549	1	0	0	0	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0078	3552	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0079	3530	1	0	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0080	3532	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0081	3531	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0082	3534	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0083	3535	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0084	3533	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0085	3534	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0086	3534	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0087	3538	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0088	3534	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0089	3536	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0090	3535	1	0	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0091	3536	1	0	0	0	0	1	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0092	3541	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0093	3537	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0094	3536	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0095	3536	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0096	3541	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0097	3552	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0098	3550	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0099	3557	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0100	3563	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0101	3565	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0102	3536	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0103	3545	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	t0104	3539	1	1	0	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDPD1_chr17_59215511_59280970	1/0	t0001	2297	82	9	16	42	4	10	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0002	2288	69	20	12	27	3	7	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0003	2288	31	4	3	21	0	3	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0004	2298	21	3	6	9	0	3	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0005	2298	21	1	2	9	1	8	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0006	2289	11	4	6	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0007	2299	7	6	1	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0008	2302	6	6	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970