JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDPD1_chr17_59215511_59280970	0/0	t0009	2289	5	3	2	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0010	2289	5	4	1	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0011	2300	5	5	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0012	2298	5	0	2	3	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/1	t0013	2289	4	0	0	3	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0014	2289	4	0	0	3	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0015	2298	3	3	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0016	2299	3	2	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0017	2299	3	1	0	2	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0018	2300	3	0	0	3	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0019	2298	2	2	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0020	2299	2	2	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0021	2299	2	0	0	1	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0022	2299	2	0	0	1	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0023	2301	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0024	2288	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0025	2299	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0026	2300	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0027	2298	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0028	2298	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0029	2298	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0030	2297	1	0	0	0	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0031	2298	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0032	2297	1	0	0	0	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0033	2300	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0034	2298	1	0	1	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0035	2288	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0036	2297	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0037	2288	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	t0038	2288	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD2_chrX_70418314_70438381	1/1	t0001	374	291	57	54	135	12	31	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0002	372	11	1	0	9	1	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0003	374	7	7	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0004	374	4	0	0	4	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0005	374	2	0	2	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0006	374	2	1	1	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	t0007	371	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD3_chr16_30099810_30118537	1/1	t0001	122	381	92	70	159	18	40	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	t0002	122	6	0	0	6	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	t0003	122	2	0	0	0	0	2	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	t0004	122	1	0	0	1	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD4_chr11_77211558_77306686	0/1	t0001	1055	153	38	20	81	3	10	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0002	1052	71	2	14	42	3	10	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	1/0	t0003	1055	61	15	8	33	1	3	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0004	1055	24	2	11	8	0	3	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0005	1055	19	18	1	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0006	1055	5	2	2	0	1	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0007	1052	4	0	0	4	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0008	1055	4	3	1	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0009	1052	2	0	0	2	0	0	copy fasta	GDPD4	chr11	77211558	77306686