JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDPD4_chr11_77211558_77306686	0/0	t0010	1055	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0011	1055	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0012	1052	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0013	1055	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0014	1055	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0015	1055	1	0	1	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	t0016	1055	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD5_chr11_75429640_75530941	0/0	t0001	1744	111	7	35	48	7	14	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0002	1744	93	19	23	40	4	7	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0003	1744	34	21	3	8	1	1	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/1	t0004	1744	29	11	0	13	2	2	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0005	1744	20	7	2	8	0	3	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0006	1744	10	8	0	2	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	1/0	t0007	1744	5	4	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0008	1744	4	4	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0009	1744	2	2	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0010	1744	2	2	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0011	1744	2	0	0	0	0	2	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0012	1744	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0013	1744	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0014	1761	1	0	0	0	0	1	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0015	1744	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0016	1744	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0017	1744	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0018	1744	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0019	1744	1	0	1	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0020	1744	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	t0021	1744	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPGP1_chr15_90229209_90250811	0/0	t0001	3943	54	0	19	22	3	10	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0002	3951	44	5	6	29	0	4	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0003	3944	36	1	2	31	0	2	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0004	3970	28	0	3	18	1	6	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0005	3959	17	6	6	0	3	2	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0006	3970	13	0	5	5	2	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0007	3952	10	1	4	5	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	1/1	t0008	3971	8	1	2	2	1	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0009	3971	7	1	4	2	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0010	3944	6	0	2	4	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0011	3962	6	5	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0012	3967	5	5	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0013	3971	5	1	2	2	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0014	3972	5	0	0	1	0	4	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0015	3971	5	0	2	3	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0016	3967	5	5	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0017	3960	5	4	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0018	3961	4	4	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0019	3966	4	4	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0020	3972	4	0	1	2	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0021	3973	4	0	1	2	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0022	3969	4	0	1	2	1	0	copy fasta	GDPGP1	chr15	90229209	90250811