Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG10B_chr12_38311774_38334721	0/0	t0074	8583	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0075	8584	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0076	8584	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0077	8584	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0078	8579	1	0	0	0	1	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0079	8578	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0080	8638	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	t0081	8585	1	0	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10_chr12_34017496_34033302	1/0	t0001	1492	166	32	35	77	2	19	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0002	1492	75	21	15	31	5	3	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/1	t0003	1492	44	6	17	7	5	8	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0004	1492	16	15	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0005	1491	10	10	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0006	1492	8	7	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0007	1492	4	1	1	0	0	2	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0008	1492	2	2	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0009	1492	2	2	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0010	1492	2	0	0	0	0	2	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0011	1492	2	0	2	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	t0012	1492	1	0	0	1	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG11_chr13_52007398_52038600	1/1	t0001	5032	142	31	19	69	2	19	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0002	5032	121	5	23	75	7	11	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0003	5032	35	4	14	10	4	3	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0004	5032	13	12	1	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0005	5032	11	3	1	4	0	3	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0006	5032	8	0	8	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0007	5032	5	5	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0008	5032	5	1	2	0	1	1	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0009	5032	4	4	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0010	5032	3	2	1	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0011	5032	2	2	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0012	5032	2	2	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0013	5032	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0014	5032	1	0	0	0	0	1	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0015	5032	1	0	0	1	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0016	5017	1	0	0	1	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0017	5032	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0018	5032	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0019	5032	1	0	1	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0020	5032	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0021	5032	1	0	0	1	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0022	5032	1	0	0	1	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	t0023	5032	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG12_chr22_49895229_49923438	1/1	t0001	3864	121	3	41	58	6	11	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0002	3864	36	0	2	29	0	5	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0003	3802	22	2	1	10	2	7	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0004	3804	16	0	2	9	0	5	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0005	3864	13	13	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0006	3749	13	5	0	7	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0007	3760	10	9	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438