JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDPGP1_chr15_90229209_90250811	0/0	t0073	3942	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0074	3952	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0075	3959	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0076	3962	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0077	3962	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0078	3961	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0079	3962	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0080	3951	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0081	3943	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0082	3944	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0083	3939	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0084	3944	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0085	3945	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0086	3953	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0087	3944	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0088	3967	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0089	3968	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0090	3953	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0091	3926	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0092	3953	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0093	3962	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0094	3963	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0095	3953	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0096	3963	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0097	3961	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0098	3963	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0099	3970	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0100	3971	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0101	3971	1	0	0	0	1	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0102	3972	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0103	3973	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0104	3963	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0105	3969	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0106	3970	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0107	3972	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0108	3970	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0109	3969	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0110	3971	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0111	3971	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0112	3972	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0113	3971	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0114	3971	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0115	3976	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0116	3973	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0117	3976	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0118	3959	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0119	3972	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0120	3971	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0121	3975	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0122	3971	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811