JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GDPGP1_chr15_90229209_90250811	0/0	t0123	3976	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0124	3976	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0125	3977	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0126	3966	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0127	3969	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0128	3967	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0129	3968	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0130	3960	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0131	3962	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0132	3960	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0133	3968	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0134	3965	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0135	3964	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0136	3965	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	t0137	3966	1	0	0	0	1	0	copy fasta	GDPGP1	chr15	90229209	90250811
GEMIN2_chr14_39109323_39141973	1/1	t0001	511	419	91	75	193	16	42	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	t0002	511	1	0	0	1	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	t0003	511	1	1	0	0	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	t0004	511	1	0	0	1	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	t0005	511	1	0	0	1	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	t0006	511	1	0	1	0	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN4_chr17_739421_757264	0/0	t0001	568	233	79	25	89	8	32	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/1	t0002	568	70	6	21	33	2	7	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0003	568	67	4	9	50	3	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	1/0	t0004	568	55	1	14	26	5	8	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0005	568	3	3	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0006	568	2	0	0	0	0	2	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0007	568	2	0	2	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0008	568	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	t0009	568	1	0	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN5_chr5_154882411_154943211	1/1	t0001	878	291	66	53	130	11	29	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0002	878	40	17	11	0	5	7	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0003	878	2	0	2	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0004	878	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0005	878	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0006	878	1	0	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0007	878	1	0	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	t0008	878	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN6_chr2_38773210_38790002	0/0	t0001	3196	184	15	31	110	9	19	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0002	3197	43	19	6	4	2	12	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0003	3201	19	16	3	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0004	3197	15	0	7	6	0	2	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0005	3196	11	0	6	0	3	2	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0006	3196	10	0	0	10	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0007	3197	9	4	2	2	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	1/0	t0008	3202	8	7	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0009	3197	8	0	0	8	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0010	3197	7	0	0	7	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0011	3198	6	0	0	6	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0012	3198	6	6	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002