JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GEMIN6_chr2_38773210_38790002	0/0	t0013	3197	5	0	0	5	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0014	3197	5	1	0	4	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0015	3197	5	0	0	3	0	2	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0016	3200	4	4	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0017	3193	4	4	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0018	3201	4	0	1	1	0	2	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0019	3201	3	3	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0020	3198	2	1	0	0	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0021	3199	2	0	1	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0022	3196	2	0	0	1	1	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0023	3196	2	0	1	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0024	3195	2	0	0	1	1	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0025	3197	2	0	2	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0026	3196	2	0	2	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0027	3196	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0028	3196	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0029	3196	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/1	t0030	3197	1	0	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0031	3197	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0032	3199	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0033	3197	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0034	3203	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0035	3198	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0036	3203	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0037	3198	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0038	3198	1	0	0	0	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0039	3197	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0040	3199	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0041	3198	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0042	3197	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0043	3200	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0044	3187	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0045	3196	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0046	3196	1	0	0	0	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0047	3201	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0048	3198	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0049	3201	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0050	3196	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0051	3196	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0052	3197	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0053	3196	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0054	3198	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0055	3196	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0056	3196	1	0	0	0	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0057	3195	1	0	1	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0058	3196	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0059	3197	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0060	3196	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0061	3197	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0062	3195	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002