JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GEMIN6_chr2_38773210_38790002	0/0	t0063	3202	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0064	3197	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0065	3200	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0066	3198	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0067	3195	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	t0068	3201	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN7_chr19_45074260_45096518	1/1	t0001	1258	304	62	52	148	8	32	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0002	1258	63	5	21	22	5	10	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0003	1258	18	13	3	2	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0004	1258	14	14	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0005	1258	14	1	8	0	1	4	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0006	1258	2	0	0	2	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0007	1258	2	2	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0008	1258	2	2	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	t0009	1258	1	1	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN8_chrX_14001726_14034892	1/1	t0001	2419	190	34	37	88	8	21	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0002	2419	53	14	15	15	1	8	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0003	2419	8	8	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0004	2419	8	7	1	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0005	2419	4	4	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0006	2489	1	0	0	1	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0007	2419	1	0	0	1	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0008	2419	1	0	0	1	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0009	2419	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0010	2419	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0011	2419	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0012	2419	1	0	1	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0013	2418	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0014	2419	1	0	0	0	0	1	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	t0015	2419	1	0	1	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEM_chr8_94244253_94267319	1/0	t0001	1297	169	18	27	101	4	18	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0002	1297	85	14	19	36	2	14	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0003	1297	31	2	2	14	6	7	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0004	1297	30	21	9	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0005	1297	27	6	4	14	0	3	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0006	1297	14	2	1	9	1	1	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0007	1297	13	10	1	2	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/1	t0008	1297	12	1	3	7	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0009	1297	12	12	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0010	1297	4	1	2	0	1	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0011	1297	2	1	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0012	1297	2	2	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0013	1297	2	0	2	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0014	1297	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0015	1297	1	0	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0016	1297	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0017	1297	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0018	1297	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0019	1297	1	0	0	0	0	1	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0020	1297	1	0	0	1	0	0	copy fasta	GEM	chr8	94244253	94267319