JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GEM_chr8_94244253_94267319	0/0	t0021	1297	1	0	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	t0022	1297	1	0	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEN1_chr2_17749138_17793946	0/0	t0001	7232	130	7	28	70	5	20	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0002	7231	50	23	13	3	7	4	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0003	7232	21	13	5	0	1	2	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0004	7232	14	0	0	14	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0005	7227	12	0	0	12	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0006	7232	8	3	0	4	1	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0007	7231	6	6	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0008	7227	5	3	0	2	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0009	7232	5	1	0	0	3	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0010	7227	4	4	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0011	7227	4	4	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0012	7231	4	3	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0013	7232	3	0	0	3	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0014	7232	3	1	0	0	1	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0015	7232	3	0	0	0	0	3	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0016	7231	2	2	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0017	7231	2	2	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0018	7232	2	2	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0019	7232	2	0	0	0	0	2	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0020	7232	2	0	2	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0021	7232	2	0	2	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0022	7231	2	0	0	2	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0023	7232	2	0	2	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0024	7232	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0025	7232	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0026	7227	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0027	7227	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0028	7227	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0029	7227	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0030	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0031	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0032	6526	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0033	7231	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0034	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0035	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0036	7232	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0037	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0038	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0039	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0040	7231	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0041	7231	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0042	7231	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0043	7231	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0044	7232	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0045	7231	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0046	7231	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0047	7232	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0048	7232	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946