JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GEN1_chr2_17749138_17793946	0/0	t0049	7232	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0050	7232	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0051	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0052	7232	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	t0053	7232	1	0	0	1	0	0	copy fasta	GEN1	chr2	17749138	17793946
GET1_chr21_39375326_39402889	0/0	t0001	1015	212	33	45	94	13	27	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	1/1	t0002	1010	101	36	19	32	4	8	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0003	1010	6	5	1	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0004	1010	3	3	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0005	1015	2	2	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0006	1010	2	2	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0007	1015	2	0	2	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0008	1015	2	2	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0009	1010	1	1	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0010	1015	1	0	0	0	1	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0011	1010	1	0	0	1	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0012	1015	1	1	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0013	1015	1	1	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0014	1015	1	0	0	0	0	1	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0015	1015	1	0	0	1	0	0	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	t0016	1015	1	0	1	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET3_chr19_12732497_12753323	1/1	t0001	229	273	83	68	84	12	24	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	t0002	229	13	13	0	0	0	0	copy fasta	GET3	chr19	12732497	12753323
GET4_chr7_871554_901436	0/1	t0001	1107	197	34	42	86	9	25	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	1/0	t0002	1107	105	28	24	39	2	11	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0003	1107	22	0	0	22	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0004	1107	9	8	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0005	1107	5	0	2	0	3	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0006	1107	3	2	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0007	1107	2	0	0	2	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0008	1107	2	1	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0009	1107	2	0	0	2	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0010	1107	2	2	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0011	1107	2	2	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0012	1107	2	2	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0013	1107	2	0	0	2	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0014	1107	2	1	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0015	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0016	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0017	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0018	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0019	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0020	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0021	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0022	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0023	1107	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0024	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0025	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0026	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0027	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436