JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GET4_chr7_871554_901436	0/0	t0028	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0029	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0030	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0031	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0032	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0033	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0034	1107	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0035	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0036	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0037	1107	1	0	0	0	0	1	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0038	1107	1	0	0	0	0	1	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0039	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0040	1107	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	t0041	1107	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GFAP_chr17_44898159_44920500	1/0	t0001	4203	153	29	26	74	5	18	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0002	4203	54	17	7	26	2	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0003	4203	49	15	7	23	2	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0004	4206	48	10	7	25	1	5	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0005	4203	40	7	9	14	0	10	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/1	t0006	4206	21	6	11	0	1	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0007	4206	11	0	0	11	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0008	4203	8	8	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0009	4203	7	0	2	0	3	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0010	4206	5	0	0	5	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0011	4203	3	0	0	3	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0012	4206	2	0	1	0	0	1	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0013	4203	2	0	2	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0014	4206	2	0	1	0	1	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0015	4203	2	0	0	0	0	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0016	4203	2	0	1	0	1	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0017	4206	2	0	0	0	0	2	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0018	4203	1	0	0	1	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0019	4203	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0020	4203	1	0	0	0	0	1	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0021	4203	1	0	0	1	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0022	4203	1	0	0	0	0	1	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0023	4203	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0024	4203	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0025	4203	1	0	0	1	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0026	4206	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0027	4206	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0028	4206	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0029	4206	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	t0030	4206	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFER_chr16_1979193_1992749	1/0	t0001	1748	271	50	40	143	13	24	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0002	1748	60	23	3	33	0	1	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0003	1745	42	0	19	6	1	16	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0004	1745	10	0	2	5	0	3	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0005	1748	9	0	6	0	2	1	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0006	1748	7	7	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749