JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFER_chr16_1979193_1992749	0/0	t0007	1747	7	0	1	3	0	3	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0008	1748	3	3	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0009	1745	2	1	0	0	1	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0010	1748	2	2	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0011	1748	2	0	2	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0012	1746	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0013	1748	1	0	1	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0014	1748	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0015	1748	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0016	1748	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0017	1748	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0018	1748	1	0	0	0	1	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0019	1748	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0020	1748	1	1	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/1	t0021	1748	1	0	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	t0022	1748	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFI1B_chr9_132973694_132996687	0/1	t0001	806	192	12	65	87	10	17	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	1/0	t0002	806	129	44	9	57	2	16	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0003	806	85	13	6	58	1	7	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0004	806	14	6	2	1	0	5	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0005	806	12	0	0	11	1	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0006	806	11	9	1	0	0	1	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0007	806	10	1	0	7	2	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0008	806	4	4	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0009	806	4	1	1	2	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0010	806	3	3	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0011	806	2	0	0	0	0	2	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0012	806	2	2	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0013	806	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0014	806	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0015	806	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0016	806	1	0	0	0	0	1	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0017	806	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0018	806	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0019	806	1	0	0	0	0	1	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	t0020	806	1	0	0	1	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1_chr1_92468043_92491925	0/1	t0001	3286	161	25	32	81	6	16	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0002	3286	47	5	10	24	3	5	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0003	3286	22	1	9	5	1	6	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0004	3286	9	9	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0005	3288	8	8	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0006	3287	8	2	2	1	3	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0007	3287	7	2	0	5	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0008	3286	7	0	6	0	0	1	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0009	3286	5	5	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0010	3286	5	5	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	1/0	t0011	3286	5	1	1	2	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0012	3286	5	0	2	1	0	2	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0013	3286	4	0	3	0	0	1	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0014	3286	4	0	4	0	0	0	copy fasta	GFI1	chr1	92468043	92491925