JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFI1_chr1_92468043_92491925	0/0	t0015	3286	4	4	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0016	3287	3	2	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0017	3286	3	3	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0018	3286	3	3	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0019	3287	2	0	2	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0020	3286	2	0	0	0	0	2	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0021	3286	2	2	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0022	3286	2	2	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0023	3286	2	0	0	0	2	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0024	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0025	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0026	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0027	3286	1	0	0	0	0	1	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0028	3287	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0029	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0030	3286	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0031	3188	1	0	0	1	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0032	3286	1	0	0	0	1	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0033	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0034	3287	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0035	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0036	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0037	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0038	3287	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0039	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0040	3287	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0041	3286	1	0	0	1	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0042	3286	1	0	0	1	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0043	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0044	3286	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	t0045	3286	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFM1_chr3_158639527_158700581	0/1	t0001	4223	130	14	26	67	6	16	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0002	4223	56	5	9	32	4	6	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0003	4219	54	8	10	30	3	3	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0004	4223	52	18	10	12	4	8	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0005	4221	9	9	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0006	4223	9	0	0	9	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0007	4223	8	7	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0008	4223	6	6	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0009	4223	5	5	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	1/0	t0010	4223	4	0	2	0	1	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0011	4223	4	4	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0012	4223	3	0	0	3	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0013	4223	3	0	0	3	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0014	4223	3	3	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0015	4223	2	0	0	0	0	2	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0016	4223	2	2	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0017	4223	2	2	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0018	4223	2	2	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0019	4223	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581