JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFM1_chr3_158639527_158700581	0/0	t0020	4223	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0021	4223	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0022	4223	1	0	0	0	0	1	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0023	4223	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0024	4223	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0025	4223	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0026	4223	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0027	4223	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0028	4223	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0029	4223	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0030	4223	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0031	4223	1	0	0	0	0	1	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0032	4219	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0033	4219	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0034	4219	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0035	4223	1	0	0	0	0	1	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	t0036	4223	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM2_chr5_74716206_74772117	1/1	t0001	654	282	87	56	94	12	31	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	t0002	654	56	2	13	35	1	5	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	t0003	652	33	1	7	24	1	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	t0004	654	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFOD1_chr6_13352830_13492600	0/0	t0001	7629	20	1	8	7	2	2	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0002	7624	14	4	5	3	0	2	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/1	t0003	7624	7	0	0	6	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0004	7624	5	5	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0005	7624	5	0	1	2	1	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0006	7624	5	5	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0007	7625	5	0	3	0	2	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0008	7624	4	3	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0009	7624	4	1	0	3	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0010	7627	4	0	0	4	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0011	7624	3	3	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0012	7631	3	0	3	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0013	7631	3	0	1	2	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0014	7628	3	0	0	2	1	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0015	7620	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0016	7623	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0017	7625	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0018	7624	2	1	0	0	0	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0019	7622	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0020	7625	2	0	0	2	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0021	7630	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0022	7624	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0023	7630	2	1	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0024	7629	2	0	0	0	0	2	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0025	7625	2	2	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0026	7623	2	0	2	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0027	7625	2	0	1	0	1	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0028	7629	2	0	0	2	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0029	7624	2	0	1	0	1	0	copy fasta	GFOD1	chr6	13352830	13492600