Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG12_chr22_49895229_49923438	0/0	t0008	3802	8	7	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0009	3806	6	6	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0010	3808	6	1	1	3	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0011	3864	5	2	0	0	2	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0012	3809	5	5	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0013	3806	4	4	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0014	3802	4	0	0	4	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0015	3860	4	0	0	3	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0016	3800	3	1	1	0	1	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0017	3800	3	0	1	0	0	2	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0018	3860	3	0	0	3	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0019	3808	2	0	0	0	0	2	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0020	3804	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0021	3802	2	1	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0022	3804	2	1	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0023	3749	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0024	3749	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0025	3749	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0026	3717	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0027	3803	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0028	3776	2	0	0	1	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0029	3780	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0030	3745	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0031	3699	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0032	3806	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0033	3760	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0034	3804	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0035	3802	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0036	3800	1	0	0	0	1	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0037	3773	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0038	3804	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0039	3804	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0040	3800	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0041	3810	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0042	3810	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0043	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0044	3862	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0045	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0046	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0047	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0048	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0049	3864	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0050	3862	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0051	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0052	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0053	3808	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0054	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0055	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0056	3864	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0057	3864	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438