JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFOD1_chr6_13352830_13492600	0/0	t0030	7629	2	0	0	2	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0031	7619	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0032	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0033	7629	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0034	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0035	7631	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0036	7619	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0037	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0038	7625	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	1/0	t0039	7624	1	0	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0040	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0041	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0042	7633	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0043	7630	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0044	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0045	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0046	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0047	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0048	7629	1	0	0	0	0	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0049	7623	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0050	7624	1	0	0	0	1	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0051	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0052	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0053	7626	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0054	7630	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0055	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0056	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0057	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0058	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0059	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0060	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0061	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0062	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0063	7621	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0064	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0065	7625	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0066	7620	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0067	7626	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0068	7627	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0069	7625	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0070	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0071	7623	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0072	7622	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0073	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0074	7624	1	0	0	0	0	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0075	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0076	7624	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0077	7626	1	0	0	0	0	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0078	7624	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0079	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600