JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFOD1_chr6_13352830_13492600	0/0	t0080	7622	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0081	7623	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0082	7613	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0083	7631	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0084	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0085	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0086	7618	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0087	7626	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0088	7626	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0089	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0090	7636	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0091	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0092	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0093	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0094	7628	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0095	7630	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0096	7630	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0097	7629	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0098	7629	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0099	7629	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0100	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0101	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0102	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0103	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0104	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0105	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0106	7628	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0107	7634	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0108	7625	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0109	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0110	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0111	7619	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0112	7622	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0113	7625	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0114	7624	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0115	7625	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0116	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0117	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0118	7634	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0119	7632	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0120	7630	1	0	0	0	0	1	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0121	7630	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0122	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0123	7631	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0124	7629	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0125	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0126	7628	1	0	0	0	1	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0127	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0128	7625	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0129	7625	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600