JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFOD1_chr6_13352830_13492600	0/0	t0130	7624	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0131	7623	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0132	7624	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0133	7622	1	0	1	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0134	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0135	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0136	7630	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0137	7629	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0138	7627	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0139	7628	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0140	7626	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0141	7624	1	1	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0142	7629	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	t0143	7629	1	0	0	1	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD2_chr16_67669536_67724316	1/0	t0001	861	94	25	27	20	3	18	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0002	861	80	46	18	8	1	7	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0003	861	2	2	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0004	861	2	2	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0005	861	2	1	1	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0006	861	2	0	2	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0007	861	1	1	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0008	861	1	1	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/1	t0009	861	1	0	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	t0010	861	1	0	0	0	0	1	copy fasta	GFOD2	chr16	67669536	67724316
GFPT1_chr2_69314780_69392227	1/0	t0001	6566	97	4	23	59	1	9	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0002	6565	89	30	17	32	2	8	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/1	t0003	6565	37	14	7	6	4	5	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0004	6562	22	2	0	18	0	2	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0005	6566	19	2	0	14	0	3	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0006	6562	14	0	0	14	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0007	6565	7	7	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0008	6565	6	1	3	0	1	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0009	6565	5	5	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0010	6565	5	0	0	5	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0011	6566	4	4	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0012	6566	3	3	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0013	6564	3	0	0	3	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0014	6566	3	0	1	2	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0015	6565	3	2	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0016	6566	2	0	0	2	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0017	6562	2	0	0	2	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0018	6564	2	0	1	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0019	6568	2	2	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0020	6567	2	2	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0021	6565	2	2	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0022	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0023	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0024	6566	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0025	6566	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0026	6643	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227