JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFPT1_chr2_69314780_69392227	0/0	t0027	6566	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0028	6566	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0029	6566	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0030	6566	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0031	6565	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0032	6565	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0033	6566	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0034	6566	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0035	6566	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0036	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0037	6565	1	0	0	0	1	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0038	6564	1	0	0	0	1	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0039	6564	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0040	6561	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0041	6563	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0042	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0043	6565	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0044	6565	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0045	6565	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0046	6565	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0047	6562	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0048	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0049	6565	1	1	0	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0050	6566	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0051	6565	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0052	6564	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0053	6561	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0054	6566	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0055	6562	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0056	6561	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0057	6566	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	t0058	6566	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT2_chr5_180295698_180358336	1/0	t0001	986	118	30	18	47	6	16	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/1	t0002	977	114	23	29	44	8	9	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0003	986	67	3	11	43	3	7	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0004	986	21	12	1	8	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0005	986	14	0	1	13	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0006	977	14	9	0	1	1	3	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0007	986	10	0	0	10	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0008	986	8	0	5	3	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0009	977	8	0	0	6	0	2	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0010	986	5	0	0	3	0	2	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0011	977	4	4	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0012	986	3	0	0	3	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0013	998	2	0	0	2	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0014	977	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0015	977	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0016	977	2	0	1	0	0	1	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0017	965	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0018	986	2	0	0	0	0	2	copy fasta	GFPT2	chr5	180295698	180358336