JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFPT2_chr5_180295698_180358336	0/0	t0019	977	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0020	968	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0021	986	1	0	0	0	0	1	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0022	977	1	0	0	0	0	1	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0023	986	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0024	986	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0025	986	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0026	977	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0027	977	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0028	977	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0029	965	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0030	965	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	t0031	977	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFRA1_chr10_116051925_116278206	0/0	t0001	7718	16	6	2	5	0	3	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0002	7718	11	5	2	2	1	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0003	7718	7	2	0	5	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0004	7760	7	0	3	3	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0005	7762	5	1	1	3	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0006	7762	5	0	1	2	0	2	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0007	7758	4	0	0	3	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0008	7764	4	0	1	3	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0009	7766	4	1	1	0	0	2	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0010	7760	3	0	0	3	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0011	7764	3	2	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0012	7717	2	0	0	0	1	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0013	7758	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0014	7762	2	1	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0015	7766	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0016	7750	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0017	7762	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0018	7734	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0019	7773	2	0	2	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/1	t0020	7760	2	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	1/0	t0021	7764	2	0	0	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0022	7760	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0023	7716	2	1	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0024	7722	2	0	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0025	7754	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0026	7756	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0027	7766	2	0	0	2	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0028	7785	2	0	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0029	7769	2	0	2	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0030	7764	2	0	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0031	7766	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0032	7768	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0033	7800	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0034	7719	2	2	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0035	7718	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0036	7718	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0037	7718	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206