JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	tseq	genename	chr	start	end
GFRA1_chr10_116051925_116278206	0/0	t0038	7718	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0039	7730	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0040	7718	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0041	7720	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0042	7720	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0043	7719	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0044	7723	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0045	7741	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0046	7724	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0047	7716	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0048	7722	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0049	7764	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0050	7762	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0051	7754	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0052	7757	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0053	7754	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0054	7756	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0055	7787	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0056	7775	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0057	7766	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0058	7772	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0059	7768	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0060	7760	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0061	7764	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0062	7766	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0063	7770	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0064	7772	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0065	7770	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0066	7770	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0067	7718	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0068	7751	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0069	7732	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0070	7719	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0071	7718	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0072	7725	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0073	7718	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0074	7722	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0075	7756	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0076	7762	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0077	7768	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0078	7750	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0079	7733	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0080	7850	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0081	7781	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0082	7787	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0083	7750	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0084	7752	1	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0085	7756	1	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0086	7762	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0087	7772	1	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206