JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFRA1_chr10_116051925_116278206	0/0	t0088	7784	1	0	0	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0089	7719	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0090	7765	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0091	7800	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0092	7734	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0093	7718	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0094	7717	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0095	7720	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0096	7716	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0097	7718	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0098	7731	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0099	7775	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0100	7762	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0101	7758	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0102	7758	1	0	0	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0103	7764	1	0	0	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0104	7776	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0105	7752	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0106	7738	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0107	7760	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0108	7760	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0109	7764	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0110	7760	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0111	7766	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0112	7787	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0113	7789	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0114	7777	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0115	7763	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0116	7766	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0117	7774	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0118	7762	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0119	7756	1	0	0	0	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0120	7772	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0121	7768	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0122	7760	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0123	7760	1	0	0	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0124	7762	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0125	7741	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0126	7730	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0127	7746	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0128	7732	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0129	7744	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0130	7743	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0131	7718	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0132	7768	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	t0133	7718	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA2_chr8_21685398_21793875	1/0	t0001	3597	62	3	16	27	5	10	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/1	t0002	3597	55	11	10	23	4	6	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0003	3597	34	10	5	13	0	6	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0004	3597	31	1	5	21	1	3	copy fasta	GFRA2	chr8	21685398	21793875