JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFRA2_chr8_21685398_21793875	0/0	t0005	3597	16	9	1	4	0	2	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0006	3597	15	8	1	4	2	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0007	3597	13	7	0	1	0	5	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0008	3597	8	5	0	1	0	2	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0009	3597	8	6	2	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0010	3597	6	6	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0011	3597	6	0	3	0	2	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0012	3597	5	0	0	5	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0013	3597	5	5	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0014	3597	4	0	0	4	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0015	3597	4	4	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0016	3597	4	4	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0017	3597	3	0	0	3	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0018	3597	3	0	0	3	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0019	3597	3	3	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0020	3597	3	3	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0021	3597	2	0	0	2	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0022	3597	2	0	0	2	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0023	3597	2	2	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0024	3597	2	0	0	2	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0025	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0026	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0027	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0028	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0029	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0030	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0031	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0032	3597	1	0	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0033	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0034	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0035	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0036	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0037	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0038	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0039	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0040	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0041	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0042	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0043	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0044	3597	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0045	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0046	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0047	3597	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0048	3597	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0049	3597	1	0	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	t0050	3597	1	0	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA3_chr5_138247380_138279621	1/0	t0001	786	199	64	26	81	7	20	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/1	t0002	786	109	7	24	59	5	13	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	t0003	786	58	9	16	22	4	7	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	t0004	786	5	5	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621