JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GFRA3_chr5_138247380_138279621	0/0	t0005	786	2	0	0	2	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	t0006	786	1	1	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	t0007	786	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	t0008	786	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA4_chr20_3654248_3668399	0/1	t0001	662	160	6	37	87	5	24	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0002	662	99	30	12	43	6	8	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	1/0	t0003	662	86	33	6	40	3	3	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0004	663	57	7	10	35	0	5	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0005	662	25	4	9	1	4	7	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0006	663	11	10	1	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0007	662	3	3	0	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0008	663	2	2	0	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0009	662	1	1	0	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0010	662	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0011	662	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0012	662	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0013	662	1	0	0	0	0	1	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0014	663	1	0	1	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	t0015	663	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRAL_chr6_55322469_55407493	0/1	t0001	725	113	3	29	65	5	10	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	1/0	t0002	727	110	40	13	37	6	13	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0003	726	75	33	7	26	0	9	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0004	726	73	10	17	40	2	4	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0005	763	3	3	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0006	726	3	3	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0007	726	2	0	0	0	0	2	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0008	725	2	0	0	2	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0009	727	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0010	726	1	0	1	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0011	690	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0012	726	1	0	1	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	t0013	725	1	0	0	0	1	0	copy fasta	GFRAL	chr6	55322469	55407493
GFUS_chr8_143607618_143622549	0/0	t0001	380	270	56	43	139	5	27	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/1	t0002	380	102	5	34	33	9	20	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0003	380	30	29	1	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0004	380	5	5	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0005	380	3	0	0	3	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0006	380	1	1	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0007	380	1	1	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0008	380	1	0	0	1	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0009	380	1	1	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	t0010	380	1	0	0	0	0	1	copy fasta	GFUS	chr8	143607618	143622549
GFY_chr19_49420388_49433987	1/1	t0001	293	337	72	56	170	9	28	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	t0002	293	110	21	22	40	7	20	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	t0003	293	2	2	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	t0004	293	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GGA1_chr22_37603834_37638564	1/1	t0001	881	205	38	55	73	10	27	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0002	881	96	37	6	49	1	3	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0003	881	42	0	7	26	2	7	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0004	881	7	6	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564