JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGA1_chr22_37603834_37638564	0/0	t0005	881	4	2	0	2	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0006	881	3	0	3	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0007	881	2	2	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0008	881	2	1	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0009	881	1	0	0	0	1	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0010	881	1	0	0	0	0	1	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0011	887	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0012	881	1	0	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0013	881	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0014	881	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0015	881	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0016	881	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	t0017	881	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA2_chr16_23458542_23515494	0/0	t0001	4132	31	13	7	8	1	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0002	4130	27	3	9	11	2	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0003	4134	17	6	3	5	1	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0004	4136	10	4	1	3	0	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0005	4148	9	1	1	4	2	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0006	4138	8	3	4	0	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0007	4134	8	2	2	3	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0008	4130	7	0	6	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0009	4150	7	2	0	4	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0010	4144	7	2	0	3	0	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0011	4132	5	1	1	2	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0012	4136	4	2	2	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0013	4124	4	4	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0014	4138	4	1	1	0	2	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0015	4160	4	0	1	3	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0016	4152	4	1	0	1	0	2	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0017	4146	4	0	0	4	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0018	4133	3	0	3	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0019	4130	3	3	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/1	t0020	4142	3	0	0	1	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0021	4132	3	0	3	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0022	4130	3	0	2	0	1	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0023	4126	3	0	0	0	0	3	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0024	4158	2	2	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0025	4152	2	2	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0026	4140	2	0	1	0	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0027	4136	2	2	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0028	4120	2	2	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0029	4140	2	0	1	0	1	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0030	4131	2	1	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0031	4154	2	0	2	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0032	4152	2	0	2	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0033	4142	2	0	0	2	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0034	4140	2	1	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0035	4136	2	0	0	2	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	1/0	t0036	4132	2	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0037	4170	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494