JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGA2_chr16_23458542_23515494	0/0	t0038	4166	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0039	4162	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0040	4164	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0041	4160	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0042	4154	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0043	4152	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0044	4154	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0045	4148	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0046	4146	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0047	4144	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0048	4138	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0049	4140	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0050	4134	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0051	4134	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0052	4132	1	0	0	0	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0053	4132	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0054	4120	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0055	4116	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0056	4140	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0057	4136	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0058	4136	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0059	4136	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0060	4134	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0061	4132	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0062	4132	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0063	4130	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0064	4126	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0065	4124	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0066	4118	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0067	4114	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0068	4110	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0069	4148	1	0	0	0	1	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0070	4166	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0071	4164	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0072	4158	1	0	0	0	1	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0073	4156	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0074	4156	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0075	4150	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0076	4148	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0077	4148	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0078	4149	1	0	0	0	0	1	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0079	4144	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0080	4140	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0081	4138	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0082	4138	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0083	4134	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0084	4150	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0085	4134	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	t0086	4134	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA3_chr17_75231599_75266606	1/1	t0001	1700	294	62	59	122	9	40	copy fasta	GGA3	chr17	75231599	75266606