JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGA3_chr17_75231599_75266606	0/0	t0002	1707	24	1	9	9	3	2	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0003	1701	13	12	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0004	1686	8	8	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0005	1700	4	4	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0006	1700	3	3	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0007	1700	3	0	2	0	1	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0008	1707	2	0	1	0	1	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0009	1714	2	0	0	0	0	2	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0010	1700	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0011	1700	1	0	0	1	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0012	1707	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0013	1707	1	0	0	0	0	1	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0014	1701	1	0	0	1	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0015	1701	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0016	1700	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0017	1700	1	0	0	0	0	1	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0018	1700	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0019	1700	1	0	0	1	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	t0020	1700	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGACT_chr13_100525180_100593789	0/1	t0001	2180	198	25	23	127	4	18	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	1/0	t0002	2183	73	13	15	32	6	6	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0003	2187	24	2	6	8	2	6	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0004	2176	13	0	0	11	0	2	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0005	2177	13	13	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0006	2183	11	1	8	0	2	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0007	2184	9	8	1	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0008	2177	5	5	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0009	2172	3	3	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0010	2173	3	3	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0011	2180	2	0	0	2	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0012	2179	2	1	1	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0013	2184	2	2	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0014	2176	2	1	0	0	1	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0015	2180	1	0	0	1	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0016	2180	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0017	2191	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0018	2183	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0019	2183	1	0	0	0	1	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0020	2183	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0021	2183	1	0	0	1	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0022	2183	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0023	2183	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0024	2185	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0025	2180	1	0	0	0	0	1	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0026	2176	1	0	0	1	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0027	2176	1	0	0	0	0	1	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0028	2172	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0029	2180	1	0	0	1	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	t0030	2177	1	1	0	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGCT_chr7_30491621_30509829	0/1	t0001	592	134	14	34	60	10	15	copy fasta	GGCT	chr7	30491621	30509829