JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGCT_chr7_30491621_30509829	0/0	t0002	592	119	11	12	81	2	13	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	1/0	t0003	592	114	27	26	46	3	11	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0004	592	40	7	2	22	1	8	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0005	592	14	12	2	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0006	592	7	4	3	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0007	592	5	5	0	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0008	592	4	3	1	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0009	592	2	2	0	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0010	592	1	1	0	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0011	592	1	1	0	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0012	592	1	0	0	1	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0013	592	1	1	0	0	0	0	copy fasta	GGCT	chr7	30491621	30509829
GGCT_chr7_30491621_30509829	0/0	t0014	592	1	0	0	0	0	1	copy fasta	GGCT	chr7	30491621	30509829
GGCX_chr2_85539720_85566493	1/0	t0001	5280	143	7	35	77	8	15	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0002	5284	77	16	4	51	1	5	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0003	5285	39	10	9	13	0	7	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0004	5284	26	10	3	4	4	5	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0005	5287	9	9	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0006	5286	9	9	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/1	t0007	5281	8	0	0	7	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0008	5285	8	1	0	6	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0009	5284	7	1	4	0	2	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0010	5284	6	4	2	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0011	5288	5	0	3	0	2	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0012	5284	4	1	3	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0013	5280	3	3	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0014	5284	3	0	0	3	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0015	5280	2	0	0	0	0	2	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0016	5280	2	0	2	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0017	5280	2	2	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0018	5280	2	0	0	0	0	2	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0019	5280	2	0	2	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0020	5280	2	2	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0021	5285	2	2	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0022	5288	2	0	1	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0023	5281	2	0	0	0	0	2	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0024	5286	2	0	0	0	0	2	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0025	5285	2	1	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0026	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0027	5280	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0028	5280	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0029	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0030	5286	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0031	5287	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0032	5287	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0033	5284	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0034	5284	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0035	5280	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0036	5280	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0037	5284	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493