JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGCX_chr2_85539720_85566493	0/0	t0038	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0039	5280	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0040	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0041	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0042	5280	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0043	5280	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0044	5280	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0045	5280	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0046	5280	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0047	5280	1	0	0	0	1	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0048	5284	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0049	5284	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0050	5286	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0051	5285	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0052	5285	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0053	5284	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0054	5284	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0055	5284	1	0	0	0	0	1	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0056	5610	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0057	5613	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0058	5614	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0059	5618	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0060	5620	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0061	5634	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0062	5284	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0063	5281	1	0	0	1	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0064	5281	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0065	5286	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	t0066	5634	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGH_chr8_63010079_63043806	1/1	t0001	292	389	85	68	183	14	37	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	t0002	292	36	2	4	23	2	5	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	t0003	292	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGNBP2_chr17_36539919_36594848	0/1	t0001	723	124	26	29	52	3	13	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0002	723	99	34	12	40	3	10	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0003	723	96	4	20	59	5	8	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0004	723	23	17	2	2	1	1	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0005	723	11	3	0	7	0	1	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0006	723	3	2	1	0	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	t0007	723	1	0	0	0	0	1	copy fasta	GGNBP2	chr17	36539919	36594848
GGN_chr19_38379267_38393034	1/1	t0001	287	384	72	74	186	14	36	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	t0002	287	5	5	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	t0003	287	3	3	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGPS1_chr1_235323570_235349532	1/1	t0001	1993	205	34	43	103	6	17	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0002	1994	95	4	20	46	4	21	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0003	1995	31	18	5	5	0	3	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0004	1993	15	14	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0005	1994	13	3	1	8	0	1	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0006	1995	6	1	0	4	0	1	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0007	1996	5	4	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0008	1994	4	0	0	4	0	0	copy fasta	GGPS1	chr1	235323570	235349532